RnoEX6006199 @ rn6
Exon Skipping
Gene
ENSRNOG00000020935 | Capn1
Description
calpain 1 [Source:RGD Symbol;Acc:2267]
Coordinates
chr1:221366467-221368831:-
Coord C1 exon
chr1:221368713-221368831
Coord A exon
chr1:221366741-221366874
Coord C2 exon
chr1:221366467-221366635
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTTCTTCCCCACAGCTG
3' ss Score
11.48
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGGACTGTTGGCTCCTGGCTGCCATTGCCTCGCTCACTCTCAACGAGACTATCCTCCACCGAGTGGTTCCCTACGGCCAGAGCTTCCAGGAGGGCTATGCTGGCATCTTTCATTTCCAG
Seq A exon
CTGTGGCAGTTTGGGGAGTGGGTAGATGTGGTCGTGGATGATTTGCTACCCACCAAGGATGGAAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAGTTCTGGAGCGCTCTCCTGGAGAAAGCCTATGCAAA
Seq C2 exon
AGTGAATGGCAGCTATGAGGCCCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGATCTGCAGAAGGCACCCAGCGACCTCTACCAGATCATTCTGAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020935-'7-9,'7-7,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.0=100)
A:
PF0064816=Peptidase_C2=FE(14.7=100)
C2:
PF0064816=Peptidase_C2=FE(18.7=100)
Main Skipping Isoform:
ENSRNOT00000028431fB2332
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTCACTCTCAACGAGACT
R:
TTAATGGAGCAGCCCAGCAAG
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]