RnoEX6009308 @ rn6
Exon Skipping
Gene
ENSRNOG00000023908 | AABR07009919.1
Description
EGF-like and EMI domain containing 1 [Source:NCBI gene;Acc:310269]
Coordinates
chr2:117103542-117116238:+
Coord C1 exon
chr2:117103542-117103679
Coord A exon
chr2:117109516-117109638
Coord C2 exon
chr2:117116038-117116238
Length
123 bp
Sequences
Splice sites
3' ss Seq
AAATGTCCTCTGCCCTTCAGACT
3' ss Score
6.44
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GAATTGAATTAGAAATTGTCAATATCTGTGAAAAGAACAATGGCGGTTGTTCTCATCACTGCAAGGCTGCGATTGGTGGACCCCATTGTTCCTGTAACCACGGACATCAGCTCGATACAGATGGGAAAACATGCATAG
Seq A exon
ACTTTGATGAATGCAAGAGCGGAGAAGCCTGCTGTGCCCAGCTCTGTATCAACTACTTAGGAGGCTATGAGTGCAGCTGTGAGGAAGGCTTTCACATCGATGCGGATGGTTGTGGATGTGACG
Seq C2 exon
CTTTAGACGATGAACAATTAGAGGAGGAAGAAGAGGAAATAGACATCCTGAGGTTTCCAGGCCTTCTGGTTCAGAGCCTACCTCAGCCACTCCCTTATCTGGATCCTTCTCTGACTGCTTCATATGAAGATGAAGACAATGATGATGCAGTCCACGGAGCAGAAGGAGAGTTCCAAGGGCTGGCTGCCTTGCACAGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023908-'4-7,'4-6,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.279
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000039603fB35
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTGGTGGACCCCATTGTT
R:
TGGAACTCTCCTTCTGCTCCG
Band lengths:
244-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]