MmuEX0016417 @ mm10
Exon Skipping
Gene
ENSMUSG00000063600 | Egfem1
Description
EGF-like and EMI domain containing 1 [Source:MGI Symbol;Acc:MGI:1922990]
Coordinates
chr3:29657130-29668438:+
Coord C1 exon
chr3:29657130-29657267
Coord A exon
chr3:29662377-29662499
Coord C2 exon
chr3:29668241-29668438
Length
123 bp
Sequences
Splice sites
3' ss Seq
AAATGTCCTCTGCCCTTCAGACT
3' ss Score
6.44
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
GAATTGAATTAGAAATTGTCAATATCTGTGAGAAGAACAATGGCGGCTGTTCTCATCACTGCGAGCCTGCAATTGGTGGAGCCCACTGTTCCTGTAACCACGGACATCAACTGGATACCGATGGGAAAACATGTATAG
Seq A exon
ACTTTGATGAATGTGAGAGCGGAGAAGCCTGCTGTGCCCAACTCTGCATCAACTACTTAGGAGGCTATGAGTGCAGCTGTGAGGAAGGCTTTCAGATCAGTTCGGATGGTTGTGGATGTGATG
Seq C2 exon
CTTTAGATGAGCAGTTAGAGGAAGAAGAAGAGGAAATAGACATTCTGAGGTTTCCAGGCCGTCTGGCTCAGAACCCACCTCAGCCATTCCCTTATCTTGATCCTTCTCTGACTGCTTCATATGAAGATGAAGACAATGATGATGCTGACTCTGAAGCAGAAGGAGAGGTCCAAGGGCTGACAGCCTTGTACAGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063600_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.502
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCCCACTGTTCCTGTAA
R:
ACTCTGTACAAGGCTGTCAGC
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types