GgaEX0013962 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19825631-19828612:-
Coord C1 exon
chr9:19828475-19828612
Coord A exon
chr9:19826187-19826309
Coord C2 exon
chr9:19825631-19825753
Length
123 bp
Sequences
Splice sites
3' ss Seq
GAGCTGCCCCATCCTTGCAGACC
3' ss Score
8.59
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GCATTGAAATGGAGATAGTGGACAGCTGCCAGCAGGACAACGGTGGGTGCTCCCACCGCTGCGAGCACACAGCAGCAGGACCACGCTGCTCCTGCCACGATGGCTACGTGCTCAGCTCAGATGGCAAGGCATGCACAG
Seq A exon
ACCTGGATGAGTGCGAGACCGGCGAGTCGTGCTGCTCCCAGTTCTGCATCAACTACGTGGGCAGCTACGAGTGCACCTGTAGAGCAGGCTTCCAGCCCAGTGCCGATGGCTGCAGCTGCGACG
Seq C2 exon
ATGTGGATGAATGTCGTCTTGAGAATGGCAACTGTGACCATATCTGCATTAATTCCCTGGGGTCATACGAATGCGCCTGCAAGGAGAGGTACCGGCTGGGTGCTGACCGGCGCTCCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAATGGAGATAGTGGACAGCTG
R:
GTCAGCACCCAGCCGGTA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]