BtaEX6069281 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50784578-50786182:+
Coord C1 exon
chr16:50784578-50784715
Coord A exon
chr16:50785584-50785703
Coord C2 exon
chr16:50786060-50786182
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTGTGGTGTGTGCCCTGCAGACG
3' ss Score
8.91
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGATCGAGATGGAGATTGTGAACAGCTGTGAGGCAGACAACGGCGGCTGCTCCCACGGCTGCAGCCACAGCAGCGCGGGCCCCGTCTGCACCTGCCCCCATGGCTACGAGCTGGATGAGGACCAGAGGACGTGTATCG
Seq A exon
ACGTCGACGACTGTGCCGCCTCCCCCTGCTGCCAGCAGGTTTGCACCAACAGCCCCGGTGGCTACGAGTGCAGCTGCTATGCTGGCTACCGGCTCAGTGCGGATGGCTGCGGGTGTGAGG
Seq C2 exon
ACGTGGACGAGTGCGCCTCTGGCCGCGGTGGCTGCGAGCACCACTGCGCCAACCTGGCCGGCTCCTTCCAGTGCTCCTGTGAGGCCGGCTACCAGCTGGACGAGGACCGCAGGGGTTGCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839-'12-13,'12-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6)
A:
PF146701=FXa_inhibition=WD(100=85.4),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGATGGAGATTGTGAACAGCT
R:
GGTCCTCGTCCAGCTGGTAG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]