GgaEX1035880 @ galGal4
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1015683-1016733:+
Coord C1 exon
chr21:1015683-1015820
Coord A exon
chr21:1015994-1016116
Coord C2 exon
chr21:1016611-1016733
Length
123 bp
Sequences
Splice sites
3' ss Seq
CACCCTCTGCTTTTATTTAGACA
3' ss Score
7.42
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGATAGAAATGGAGATTGTGAGCAGCTGTGAGAGTGGCAACGGTGGCTGCTCCCATTTGTGCCACCACAGCAGCGCCGGCCCCATCTGCACCTGTAACTCAGGCTACCAGCTGCAGGATGACCAGAGGACATGCACTG
Seq A exon
ACATCAACGAATGTGAGGATGGCTCTCACTGCTGCCAGCAGGACTGCTACAACTACCCTGGGGGCTACGAGTGTGCCTGCCATGCTGGGTACCGGCTGCGTGCTGATGGCTGTGCCTGCGATG
Seq C2 exon
ATGTGGATGAGTGCTCCTCCAACAACGGTGGCTGTGAGCACACGTGCCAGAACCAAGTGGGGTCCTTCCAGTGCGGCTGTCCCATTGGGTACAAGCTGGATGGAGACAGGAGGGGCTGCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040_MULTIEX1-3/4=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATTGTGAGCAGCTGTG
R:
CCTCCTGTCTCCATCCAGCTT
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]