HsaEX0038754 @ hg19
Exon Skipping
Gene
ENSG00000162591 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:3232]
Coordinates
chr1:3425639-3428251:-
Coord C1 exon
chr1:3428114-3428251
Coord A exon
chr1:3427347-3427466
Coord C2 exon
chr1:3425639-3425809
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCGTGGCGTGTGCTCCACAGATG
3' ss Score
9.23
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GGATTGAGATGGAAATCGTGAACAGCTGTGAGGCCAACAACGGCGGCTGCTCCCATGGCTGCAGCCACACCAGTGCTGGGCCCCTGTGCACATGTCCCCGCGGCTACGAGCTGGACACAGATCAGAGGACCTGCATCG
Seq A exon
ATGTCGACGACTGTGCAGACAGCCCGTGCTGCCAGCAGGTGTGCACCAACAACCCTGGCGGGTACGAGTGCGGCTGCTACGCCGGCTACCGGCTCAGTGCCGATGGCTGCGGCTGTGAGG
Seq C2 exon
CCCTGGAGGAGCCGATGGTGGACCTGGACGGCGAGCTGCCTTTCGTGCGGCCCCTGCCCCACATTGCCGTGCTCCAGGACGAGCTGCCGCAACTCTTCCAGGATGACGACGTCGGGGCCGATGAGGAAGAGGCAGAGTTGCGGGGCGAACACACGCTCACAGAGAAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162591_MULTIEX2-6/7=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.298
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6)
A:
PF146701=FXa_inhibition=WD(100=85.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGCTGTGAGGCCAACAA
R:
ACTCTGCCTCTTCCTCATCGG
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)