DreEX6093196 @ danRer10
Exon Skipping
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41143787-41148401:-
Coord C1 exon
chr11:41148264-41148401
Coord A exon
chr11:41147549-41147671
Coord C2 exon
chr11:41143787-41143909
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTGTATTCTCTCCTGTCAGATA
3' ss Score
10
5' ss Seq
ATGGTAACA
5' ss Score
4.87
Exon sequences
Seq C1 exon
GTATTGAGATGGAGATCGTGAACAGCTGTGATCATGATAATGGTGGTTGTTCTCATCACTGTGAACATTCGACCGCTGGTCCGCTGTGCAGCTGTAATGAAGGATATCAGCTGGACCACGACCACAAGACCTGCGTCG
Seq A exon
ATATAAACGAGTGTGTCGACGGCAGCTCGTGTTGTGAACATGACTGTACGAACTATCCTGGAGGATACGAGTGTTACTGTACAGCCGGATATCGACTGAACACTGACGGATGCAGCTGTGATG
Seq C2 exon
ATATAGATGAGTGTTTGGCTGTTAATGGAGGATGTGATCATGCTTGTCTGAACAGCGCCGGCTCTTTCCAGTGTTCCTGTAGACGTGGATATCGACTCGATGAGGACAGAAGATCCTGCATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(81.8=38.3)
A:
PF126622=cEGF=PD(13.6=7.1),PF126622=cEGF=PU(83.3=47.6)
C2:
PF126622=cEGF=PD(12.5=7.1),PF146701=FXa_inhibition=WD(100=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATCGTGAACAGCTGTG
R:
GCAGGATCTTCTGTCCTCATCG
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]