RnoEX6009309 @ rn6
Exon Skipping
Gene
ENSRNOG00000023908 | AABR07009919.1
Description
EGF-like and EMI domain containing 1 [Source:NCBI gene;Acc:310269]
Coordinates
chr2:117094733-117103679:+
Coord C1 exon
chr2:117094733-117094852
Coord A exon
chr2:117097356-117097478
Coord C2 exon
chr2:117103542-117103679
Length
123 bp
Sequences
Splice sites
3' ss Seq
TACCATGTCTCTCCCTGCAGATA
3' ss Score
12.98
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGACAGACCCCTGCGCAGGTGCAAATGGATGTGCTCACCTGTGTCAAAGCGAGAATGGCATGGCCAGGTGCGCCTGCCATGCTGGGTACCAGTTGTCTGAAGACAAAAAGGCCTGCGAAG
Seq A exon
ATATAAATGAGTGTGCTGAGGAGCTCACTACCTGTGCTCATGGCTGTGTGAACTCAAAGGGGTCCTTCACGTGCACCTGCCAGCCTGGCTTTGAGCTAGGAGCTGATGGGAAACACTGTTACA
Seq C2 exon
GAATTGAATTAGAAATTGTCAATATCTGTGAAAAGAACAATGGCGGTTGTTCTCATCACTGCAAGGCTGCGATTGGTGGACCCCATTGTTCCTGTAACCACGGACATCAGCTCGATACAGATGGGAAAACATGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023908-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.4),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGTGCAAATGGATGTG
R:
TGCATGTTTTCCCATCTGTATCGA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]