DreEX6080160 @ danRer10
Exon Skipping
Gene
ENSDARG00000079199 | megf6a
Description
multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
Coordinates
chr23:21238572-21241352:-
Coord C1 exon
chr23:21241230-21241352
Coord A exon
chr23:21240719-21240841
Coord C2 exon
chr23:21238572-21238709
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTGTAATCGGTGTGTTTCAGATG
3' ss Score
7.62
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
TGAGGAACCCATGTGTGGAGAAGAATGGCGGCTGTGTGCATTTATGTCGCAGTGATGGTGGTCGGGTTGTGTGCAGCTGTCACCAAGGCTTCATGCTAGCAGTGGACCAGAAGAGCTGTGAAG
Seq A exon
ATGTCAATGAGTGTGAAACAGGACTGGCAGCATGTGCACACAGTTGCAGGAACACTCCAGGATCGTTTTCCTGCATCTGCAATCCAGGATACGAGCTGGGCTCTGATGGAAGGAAATGCTACC
Seq C2 exon
GTATTGAAATGGAGATTGTCAATACCTGTGACTCTGATAATGGTGGCTGTTCACATCGCTGTCAGCATGGTGTTCTTGGGCCTGTCTGCAGCTGTAATCATGGTTATCAGCTCGCCGAAGACCTCAAAACCTGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079199-'4-4,'4-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2)
C2:
PF146701=FXa_inhibition=WD(100=76.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTGGAGAAGAATGGCGG
R:
ACAGGTTTTGAGGTCTTCGGC
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]