RnoEX6009381 @ rn6
Exon Skipping
Gene
ENSRNOG00000056177 | AABR07010085.2
Description
NA
Coordinates
chr2:122711613-122716888:-
Coord C1 exon
chr2:122716598-122716888
Coord A exon
chr2:122715308-122715522
Coord C2 exon
chr2:122711613-122711835
Length
215 bp
Sequences
Splice sites
3' ss Seq
CTGCATTCAATTTGCTGTAGGCA
3' ss Score
6.04
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGTGATGATCTTACTGCAAAACTGGAAACTGCAACGTCCAAATGTCTACATCTCTATAAGCAAAATCAGCTGCTCCAGCGGGAGTTACTCTCTATGAAAATGATACAAAGGAAATATGAAAAATTAAAGAAGCATAAAAAGAAGTTAGAACAAGAAATAGCTAACCTCAGAAGTCACATGGAGCAGCATATGATAGAGTGTGGTCAAATAGAACAGTATAAGTGGGAAATCGAAGAGAAGACAAAGCAGGATTTGGTGGAAAAATTAAAACAAGTCAACCTATTCTTGCAG
Seq A exon
GCACAAGCAGCGTATGAGGACAAGCTAGAGAAGCTAAGACACAAACAGAACGCTTCGGTGCGAACTCAGATGGAGCTCAGAATAAGGGACCTGGAGTCTGAATTCTCTAAGATGAAAAGCCAAGTTGACTGTAATCAAATAGAAATGGAAAACTACAAGCAGCTCTACCTAGAAGAAGTGAAAATTAGAAAATCGTTGTCAAATAAATTAAGCAA
Seq C2 exon
AACAGATGAAAGACTGGCAGAGGTCAAGACCAAACTTCTCCTAGAGAGAAAACAGAACAGAGCTTCACAGTACAGCATGGTTGACATAAGACCCGTCCTGGAGTCCACCTGTCCAAGAGACAGTAATAGATTTTTCACTCCAAGAAGCTTCTCTAGAGAAAATATGCTTTCTACATCAAACCTCTGGCTTTCAGTTGAGACCATGGAAAACTGCAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056177-'12-16,'12-15,13-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF120013=DUF3496=PU(48.1=72.2)
C2:
PF120013=DUF3496=PD(50.9=73.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAAACTGCAACGTCCAA
R:
TTGGTCTTGACCTCTGCCAGT
Band lengths:
304-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]