RnoEX6010029 @ rn6
Exon Skipping
Gene
ENSRNOG00000024208 | Prss48
Description
serine protease 48 [Source:RGD Symbol;Acc:11436036]
Coordinates
chr2:185298879-185302050:-
Coord C1 exon
chr2:185302006-185302050
Coord A exon
chr2:185301266-185301428
Coord C2 exon
chr2:185298879-185299138
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTCTTCTTTATCTAGTAT
3' ss Score
8.16
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGGCTTACCAGGGCTCTCTAACCAAACAGAAAAAGCTGCAGTCAG
Seq A exon
TATGTGGACGGCCTGTATACTCTGGACGCATTGTGGGCGGCCAAGGTGCTGCTCTGGGGCACTGGCCCTGGCAGGTCAGCCTGCGGTTTGACAGCACCCACATCTGTGGAGGTTCTCTCATCAGTAACCACTGGGTAATGACGGCAGCACACTGCATAAAAAA
Seq C2 exon
GACCTGGTTCAGCTTTCTTTACAGTGTGTGGCTTGGATCCATCGATAGAGATTACTCAAGCACAGGCGAGGAATATTACGTGTCCAGAATCGTCATCCCTAGCAAACACCACAATACAGACGGAGATATCGCCCTGCTGAAGCTGTCTTCCCGGGTCACCTTCACGTCGCTCGTTCTGCCCATCTGTTTGCCCAATATCTCAAAGCCGCTGACAGTTCCAGCTTCTTGCTGGGTGACTGGATGGGGGCAAAATCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024208-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.0=80.0)
C2:
PF0008921=Trypsin=FE(37.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTACCAGGGCTCTCTAA
R:
AGCGGCTTTGAGATATTGGGC
Band lengths:
255-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]