RnoEX6010761 @ rn6
Exon Skipping
Gene
ENSRNOG00000018835 | Notch2
Description
notch 2 [Source:RGD Symbol;Acc:3188]
Coordinates
chr2:200285488-200287561:+
Coord C1 exon
chr2:200285488-200285601
Coord A exon
chr2:200286921-200287040
Coord C2 exon
chr2:200287409-200287561
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGCTGACATTTGTTTTCCAGGCA
3' ss Score
7.26
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GCTATAACTGCCAGGTGAACATAGATGAGTGTGCCTCGAACCCGTGTCTGAACCAAGGGACCTGCCTCGATGACGTCAGTGGCTACACCTGCCACTGCATGCTGCCTTACACAG
Seq A exon
GCAAGAATTGTCAAACGGTGTTGGCGCCCTGCTCCCCTAACCCGTGTGAGAACGCTGCAGTTTGTAAAGAGGCACCCAACTTTGAGAGCTTCACCTGCCTGTGTGCCCCTGGCTGGCAAG
Seq C2 exon
GTCAGCGCTGTACAGTTGACGTTGATGAGTGTGTCTCCAAGCCGTGTATGAACAATGGCATCTGCCATAATACTCAGGGCAGCTACATGTGCGAGTGCCCTCCCGGCTTCAGTGGTATGGACTGTGAGGAGGACATCAATGACTGCCTTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018835-'25-23,'25-22,27-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.3=71.8)
A:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
C2:
PF0000822=EGF=PD(6.1=3.8),PF0000822=EGF=WD(100=57.7),PF0000822=EGF=PU(9.7=5.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAGTGTGCCTCGAACCC
R:
TGGCAAGGCAGTCATTGATGT
Band lengths:
245-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]