GgaEX1040103 @ galGal4
Exon Skipping
Gene
ENSGALG00000002922 | NOTCH2
Description
neurogenic locus notch homolog protein 2 precursor [Source:RefSeq peptide;Acc:NP_001238962]
Coordinates
chr8:4196544-4198250:+
Coord C1 exon
chr8:4196544-4196689
Coord A exon
chr8:4197868-4197987
Coord C2 exon
chr8:4198098-4198250
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTTCTGCACTCCAGGTG
3' ss Score
10.26
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GTACAAATGTGTCTGTGACCCAGGCTGGATAGGAGATTACTGTTCAACAGAAGGGAACGAATGTAAATCAAACCCGTGCCAAAACGGAGGGACTTGTGAGGATCTGCTGAATGGATATAGGTGTACCTGCAGGAAAGGATTCAAAG
Seq A exon
GTGTGAACTGCCAGGTAGTGGTTGCACCATGTTCCCCCGACCCTTGTGAGAACTCGGGAATTTGCCAAGAGTCTCCTGATTCCGAAGGCTACACCTGCCAGTGTGCCCCTGGCTGGGAAG
Seq C2 exon
GGGAGAGGTGTACAGTGGATATTGATGAATGTCTCTCAAAGCCCTGCAAAAATCATGCTTTGTGCCATAATATTCAAGGCAGTTACCTGTGTGAATGTCGTCCAGGCTTCACTGGAGGAGACTGTGACAGTAACATTGATGACTGCCTGTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002922_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.3=26.0),PF0000822=EGF=PU(90.3=56.0)
A:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
C2:
PF0000822=EGF=PD(6.1=3.8),PF0764510=EGF_CA=WD(100=75.0),PF0000822=EGF=PU(9.7=5.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGACCCAGGCTGGATAG
R:
AAGCCTGGACGACATTCACAC
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]