DreEX0051125 @ danRer10
Exon Skipping
Gene
ENSDARG00000043130 | notch2
Description
notch 2 [Source:ZFIN;Acc:ZDB-GENE-000329-4]
Coordinates
chr8:19566793-19568860:+
Coord C1 exon
chr8:19566793-19566938
Coord A exon
chr8:19567026-19567139
Coord C2 exon
chr8:19568741-19568860
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTGCCCTTTCTTTCATTCAGGTT
3' ss Score
11.44
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTATCTTTGTCAATGTGAGCCAGGCTGGGAGGGTACGAACTGTGACCAAGAGAAGAACGAGTGTCTGTCCAACCCGTGTCAGAATGGTGGAACCTGTAATGACCGTCTGAATGATTATACCTGCGTATGCGCCCGTGGGTTTGCAG
Seq A exon
GTTTCAACTGTGAGATCAACATAAATGAATGTGAGTCAAACCCCTGCATGAATCAGGGAACCTGTGTGGATGGAGTCAACAGCTACGTATGCCACTGCAAACCACCTTACACAG
Seq C2 exon
GGAAACACTGTCTGGAGAAGTTGATCCCATGTGCCTCTCAGCCCTGTCAGAGACGAGGAGTCTGTCAGCCATCGCTGGATTACACCAGCTACACCTGCAAATGCCACAGCGGCTGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043130-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=26.0),PF0000822=EGF=PU(93.3=56.0)
A:
PF0000822=EGF=PD(3.3=2.6),PF0000822=EGF=PU(90.3=71.8)
C2:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCAATGTGAGCCAGGCTG
R:
TGGCATTTGCAGGTGTAGCTG
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]