DreEX0051126 @ danRer10
Exon Skipping
Gene
ENSDARG00000043130 | notch2
Description
notch 2 [Source:ZFIN;Acc:ZDB-GENE-000329-4]
Coordinates
chr8:19567026-19569261:+
Coord C1 exon
chr8:19567026-19567139
Coord A exon
chr8:19568741-19568860
Coord C2 exon
chr8:19569109-19569261
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGGACTTTTCACTTCTCAGGGA
3' ss Score
7.59
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTTTCAACTGTGAGATCAACATAAATGAATGTGAGTCAAACCCCTGCATGAATCAGGGAACCTGTGTGGATGGAGTCAACAGCTACGTATGCCACTGCAAACCACCTTACACAG
Seq A exon
GGAAACACTGTCTGGAGAAGTTGATCCCATGTGCCTCTCAGCCCTGTCAGAGACGAGGAGTCTGTCAGCCATCGCTGGATTACACCAGCTACACCTGCAAATGCCACAGCGGCTGGGAGG
Seq C2 exon
GAGCCCAATGCACAGAGGATAAAGACGAGTGTAAGAAGAGCCCTTGTCAGAATGGTGCTCGCTGTGTGAATATAGTTGGCAGCTACCGTTGCGAATGCCCGCCTGGATACAGCGGGGACAACTGCCAGACCAACATCGATGACTGCAGCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043130-'15-18,'15-17,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(3.3=2.6),PF0000822=EGF=PU(90.3=71.8)
A:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
C2:
PF0000822=EGF=PD(6.1=3.8),PF0000822=EGF=WD(100=65.4),PF0000822=EGF=PU(9.7=5.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTGAGTCAAACCCCTGC
R:
TAGAGCTGCAGTCATCGATGT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]