RnoEX6013462 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78120400-78121613:+
Coord C1 exon
chr4:78120400-78120555
Coord A exon
chr4:78121006-78121215
Coord C2 exon
chr4:78121446-78121613
Length
210 bp
Sequences
Splice sites
3' ss Seq
AGATCGTTCTTATCATGCAGCGC
3' ss Score
6.78
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGGCTGGGGCCCATGGTCTCCATGGTCTCCCTGTTCCCACAGTTGCACAGACCTCACTCACCCGGCATGGCGCAGCCGCACGCGCCTCTGTTTGGCTAACTGTACAGTAGGGGACTCTTCACAGGAACGTCCGTGCAACCTACCCTCATGCACAA
Seq A exon
CGCTGCCCCTGTGCCCTGGCCCTGGCTGTGGGTCAGAGAACTGTTTCTGGACATCCTGGGCCCCATGGGAGCCTTGCTCCCGCAGCTGTGGGGTGGGCCAGCAGCGTCGGCTACGAGCATATCATCCTCCTGGGCCTGGTGGACACTGGTGCCCTGACATCCTGACTGCGTATCAGGAGCGTCGCTTCTGCAACCTTCGTGCTTGTCCAG
Seq C2 exon
TGCCTGGGGGCTGGTCCCACTGGAGTCCCTGGTCCTGGTGTGATCGCAGCTGTGGAGGAGGTCGATCCTTGAGGAGCAGAAGCTGCTCAAGCCCACCACCCAAGAACGGGGGAGCATCCTGTGTTGGGGAGAGGCACCATGTCCGGTCCTGCAATCCCATGCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'83-87,'83-86,84-87=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=73.2)
C2:
PF0009014=TSP_1=WD(100=89.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTCTCCATGGTCTCCCTG
R:
GATTGCAGGACCGGACATGG
Band lengths:
299-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]