BtaEX0034656 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113477951-113479152:+
Coord C1 exon
chr4:113477951-113478106
Coord A exon
chr4:113478605-113478814
Coord C2 exon
chr4:113478985-113479152
Length
210 bp
Sequences
Splice sites
3' ss Seq
GCATCCTGTCCCGCCCGCAGAGT
3' ss Score
10.08
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
GCGGCTGGGGCCTGTGGTCCCCGTGGTCCCCCTGCTCCGGTACCTGCACAGACCCGGCTCACCCCGCTTGGCGCAGCCGCAGCCGCCTCTGCCTGGCGAACTGCACTGGGGGTGCCGCTTCCCAGGAACGCCCCTGCAACCTGCCCTCCTGCACAG
Seq A exon
AGTTGCCCCTGTGCCCGGGCCCTGGCTGCGAGGCCGGGAACTGTTCCTGGACTGCCTGGGCCCCGTGGGAGCCGTGCTCCCGCAGCTGTGGGGTGGGCCAGCAGCGCCGCCTGCGGGCCTACCACCCCCCAGGGCCCGGTGGACACTGGTGCCCTGACGTGCTTACAGCCTACCAGGAACGCCGCTTCTGCAACCTGCGAGCTTGCCCAG
Seq C2 exon
TGCCTGGAGGCTGGTCACGCTGGAGCCCCTGGTCCTGGTGCGACCGGAGCTGCGGAGGGGGCCGGTCCCTGAGGAGCCGCAGCTGCTCGAGCCCCCCACCCAAGAACGGCGGCGCCCCCTGTGTTGGGGAGAGGCATCACGCACGGCTCTGCAATCCCACGCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'93-92,'93-90,94-92
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=WD(100=73.2)
C2:
PF0009014=TSP_1=WD(100=89.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCGGTACCTGCACAG
R:
CACAGGGCGTGGGATTGC
Band lengths:
293-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development