RnoEX6013463 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78120212-78121215:+
Coord C1 exon
chr4:78120212-78120253
Coord A exon
chr4:78120400-78120555
Coord C2 exon
chr4:78121006-78121215
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCACCCCCTCCTTCCCACAGGTG
3' ss Score
13.16
5' ss Seq
CAAGTATGA
5' ss Score
4.72
Exon sequences
Seq C1 exon
GGACTGCGGGGTCCACCGTGGAGCCGGTGACAGGCCTTGCAG
Seq A exon
GTGGCTGGGGCCCATGGTCTCCATGGTCTCCCTGTTCCCACAGTTGCACAGACCTCACTCACCCGGCATGGCGCAGCCGCACGCGCCTCTGTTTGGCTAACTGTACAGTAGGGGACTCTTCACAGGAACGTCCGTGCAACCTACCCTCATGCACAA
Seq C2 exon
CGCTGCCCCTGTGCCCTGGCCCTGGCTGTGGGTCAGAGAACTGTTTCTGGACATCCTGGGCCCCATGGGAGCCTTGCTCCCGCAGCTGTGGGGTGGGCCAGCAGCGTCGGCTACGAGCATATCATCCTCCTGGGCCTGGTGGACACTGGTGCCCTGACATCCTGACTGCGTATCAGGAGCGTCGCTTCTGCAACCTTCGTGCTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'82-86,'82-85,83-86=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGAGCCGGTGACAGG
R:
CTGGACAAGCACGAAGGTT
Band lengths:
236-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]