BtaEX6029375 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113477764-113478814:+
Coord C1 exon
chr4:113477764-113477805
Coord A exon
chr4:113477951-113478106
Coord C2 exon
chr4:113478605-113478814
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTCTCCCCACCCAAGGCG
3' ss Score
5.63
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGGCTGCAGGGTCCACGGCGGAGCCAGCGACAGGCCTTCCAG
Seq A exon
GCGGCTGGGGCCTGTGGTCCCCGTGGTCCCCCTGCTCCGGTACCTGCACAGACCCGGCTCACCCCGCTTGGCGCAGCCGCAGCCGCCTCTGCCTGGCGAACTGCACTGGGGGTGCCGCTTCCCAGGAACGCCCCTGCAACCTGCCCTCCTGCACAG
Seq C2 exon
AGTTGCCCCTGTGCCCGGGCCCTGGCTGCGAGGCCGGGAACTGTTCCTGGACTGCCTGGGCCCCGTGGGAGCCGTGCTCCCGCAGCTGTGGGGTGGGCCAGCAGCGCCGCCTGCGGGCCTACCACCCCCCAGGGCCCGGTGGACACTGGTGCCCTGACGTGCTTACAGCCTACCAGGAACGCCGCTTCTGCAACCTGCGAGCTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'92-90,'92-89,93-90=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGACAGGCCTTCCAG
R:
TGGGCAAGCTCGCAGGTT
Band lengths:
227-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]