MmuEX6004201 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48487043-48488111:+
Coord C1 exon
chr6:48487043-48487084
Coord A exon
chr6:48487225-48487380
Coord C2 exon
chr6:48487902-48488111
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTATTCCTCCTTCCCACAGGTG
3' ss Score
13.15
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GAACTGCAGGGTCCACAGTGGAGCCGGTGACAGGCCTTGCAG
Seq A exon
GTGGCTGGGGCCCGTGGTCTCCATGGTCTCCGTGTTCCCACAGTTGCACAGACCCTGCTCACCCGGCGTGGCGCAGCCGCACACGCCTCTGTTTGGCTAACTGTACAGTAGGGGACTCCTCACAGGAACGTCCGTGCAACCTGCCCTCATGTGCAG
Seq C2 exon
CGCTGCTCCCGTGCCCTGGCCCTGGCTGTGGGTCAGGGAACTGTTTCTGGACGTCCTGGGCCCCATGGGAGCCTTGCTCCCGAAGCTGTGGTGTGGGCCAGCAGCGTCGCCTAAGAGCATATCACCCCCCTGGGCCTGGTGGACACTGGTGCCCTGACATCCTGACTGCGTACCAAGAGCGCCGCTTCTGCAACCTTCGTGCTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'86-94,'86-90,87-94=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=73.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGCAGGGTCCACAGTG
R:
AAGCACGAAGGTTGCAGAAGC
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types