HsaEX0061890 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149818456-149819515:+
Coord C1 exon
chr7:149818456-149818497
Coord A exon
chr7:149818652-149818807
Coord C2 exon
chr7:149819306-149819515
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTCCCCAATCCCTCCCCCAGGTG
3' ss Score
10.23
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGGCTGAAGGGTCCACGGTGGAGCCAGTAACAGGCCTTCCAG
Seq A exon
GTGGCTGGGGCCCATGGTCCTCCTGGTCCCCCTGCTCCAGAAGCTGCACGGACCCCGCTCGCCCTGCATGGCGCAGCCGCACCCGCCTCTGCCTGGCTAACTGCACCATGGGGGACCCATTACAGGAGCGCCCCTGCAACCTGCCCTCATGCACAG
Seq C2 exon
AGCTGCCCGTGTGCCCTGGCCCTGGCTGTGGGGCTGGGAACTGTTCCTGGACCTCCTGGGCCCCGTGGGAACCTTGCTCCCGCAGCTGCGGAGTGGGCCAGCAGCGCCGCCTGCGGGCATACCGTCCCCCTGGGCCCGGCGGGCACTGGTGCCCCAACATCCTTACTGCCTACCAAGAGCGCCGCTTCTGCAACCTGCGAGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'101-115,'101-114,102-115
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGGTCCACGGTGGA
R:
GGCTCGCAGGTTGCAGAAG
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development