GgaEX6017968 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:341659-343163:+
Coord C1 exon
chr2:341659-341931
Coord A exon
chr2:341999-342145
Coord C2 exon
chr2:343033-343163
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACCCTCTGCTCTGCCACAGCTG
3' ss Score
8.6
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
GCGTTCCCAAATATCCCCGGGGCTCTGGGGATGGAGGGGACCAGGTGACACTACGGCCCGTGACATGCCACCTCTCCACCCCAGGGGCCGAACACTGCACGTGGGGCACATGGAGCCCCTGCTCCCGGAGCTGTGGCACCGGCCTGGCCTCTCGGGAGGGCTCCTGCCCTTGCCCATTTCCGGGTCCCCCTGGTGCCCTCTGCAATGCCAGCACCGGAGATGGAGCCAGAGCTCACCGGGAGGTGCAGGCCTGCTACCTGCGCCCCTGCCCAG
Seq A exon
CTGAGTGTTCCTGGAGTGCCTGGAGCTCCTGGGGCGGCTGCTCCTGCAGCTCCCCACTGCAGCACCGGTACCGGCACCGGCATGGCACCGGCCTCTGCGTGGGGCTGGACGTGGAGCTGCACCCCTGCAACACCTCGGGATGCTTTG
Seq C2 exon
AATCCAGCTGTGAGCCCCCCTTTGAGTTCCAGCCCTGCAGCCCTCCCTGCGCCCGGCTCTGCTCCACGCTGCAGCACCCGGAGCTGTGCCCAGCCCAGTCCCACTGCCTGCCTGGCTGCTTCTGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'83-86,'83-85,84-86=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=63.0)
A:
PF0009014=TSP_1=WD(100=86.0)
C2:
PF0182612=TIL=PU(84.2=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATGCCACCTCTCCAC
R:
CTGCAGGGCTGGAACTCAAAG
Band lengths:
254-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]