BtaEX0034658 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113481224-113483434:+
Coord C1 exon
chr4:113481224-113481568
Coord A exon
chr4:113482173-113482340
Coord C2 exon
chr4:113483304-113483434
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGGCCCCACTTGGTCCCTAGAGG
3' ss Score
7.33
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGCTCGGGGCCTGGACGCCGTGGTCCCCCTGGTCTGACTGCCCTGTCTCCTGTGGAGGTGGAAACCAGGTCCGCACCCGGGTCTGTGTGGCCTCGGCCCCTCCCCGAGGGGGCTCCCCCTGCCTGGGCCCCGATGTCCAGAGCCAGCGCTGCGGGCTGTGGCCTTGCCCGGCGCTGCCAGACACCTGCTCCTGGGGCCCCTGGGGGCCCTGCTCCCGCAGCTGCGGTCCGGGCCTGGCCTCTCGCTCTGCGTCCTGCCCCTGCCTGCTAGCTGAGGCTGAGCCCGCCTGCAACAGTACCTCCCCGCGCCTGGACACCCAGGCCTGCTATGCGGGGCCCTGCCTGG
Seq A exon
AGGAGTGTGTGTGGAGCAGCTGGAGCAGCTGGACGCGGTGCTCATGCGAGGTGCTGGTGCAGCAGCGCTACCGACACCAGCGGCCCGCGCCCGGGGGCGCCGGGGCGGGCCCCCCCTGCACTCGACTGGACGGCCACTTCCGGCCTTGCCTCACGGGAAACTGCTCCG
Seq C2 exon
AGGACAGCTGTGCGCCTCCCTTCGAGTTCCAGGCCTGTGGCTCCCCCTGCACTGGACTCTGTGCCACATACCTGAGCCCTTGGCTCTGCCAGGACCTGCCGCCCTGCCAGCCTGGCTGCTACTGCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(39.7=21.6),PF0009014=TSP_1=WD(100=44.0),PF0009014=TSP_1=WD(100=44.8)
A:
NO
C2:
PF0182612=TIL=PU(71.4=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAGACACCTGCTCCT
R:
AGGTATGTGGCACAGAGTCCA
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development