MmuEX6004195 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48490818-48492228:+
Coord C1 exon
chr6:48490818-48491162
Coord A exon
chr6:48491409-48491576
Coord C2 exon
chr6:48492098-48492228
Length
168 bp
Sequences
Splice sites
3' ss Seq
CCATCCCTGCCCATCTCTAGACG
3' ss Score
6.79
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGCCCAGAGGCTGGACATTGTGGTCCTCCTGGTCCTACTGTTCTGTCTCTTGCGGAGGGGGAAGCCAGGTCCGCACTCGATCCTGCACGGTGTCAGCCCCTCCGCATGGGAGCCTATCTTGCGAGGGCCCAGACACCCAGACCCGGCACTGTGGGCAGCAGTTGTGCCTGCAGAAGCTAGAAAGGTGCTCCTGGGGACCATGGGGACCCTGTTCCCGCAGCTGTGGCACAGGTCTGGCCTCCCGCTCTGGATCCTGTCCCTGTCTACTGACCAAAGAGGACTCCAAGTGTAATGACACATTCTTAGGCCTGGACACCCAGGCCTGCTACTCAGGGCCCTGTCAGG
Seq A exon
ACGACTGCACGTGGGGCGACTGGAGCAGCTGGACACGCTGCTCCTGTAAGGTCCTGGTGCAGCAGCGTTACCGACATCAGGTGCCAGCACCTGGCCAGGCTGGAGAGGGCACCCCTTGCACCCGTCTGGATGGCCACTTCAGGCCTTGTACCATTGGCAACTGCTCAG
Seq C2 exon
AGGACAGCTGCCCACCTCCATTTGAGTTCCAGTCTTGTGGCTCCCCCTGTGCTGGGCTCTGTGCCACACATCTGAACCATCGTCTTTGCCAGGACTTACCACCTTGCCAGCCTGGCTGCTACTGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'96-103,'96-101,97-103=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(42.4=24.1),PF0009014=TSP_1=WD(100=44.0),PF0009014=TSP_1=WD(100=44.8)
A:
NO
C2:
PF0182612=TIL=PU(71.4=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAAAGGTGCTCCTGGGGA
R:
ACGATGGTTCAGATGTGTGGC
Band lengths:
252-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types