RnoEX6013489 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78103447-78105368:+
Coord C1 exon
chr4:78103447-78103590
Coord A exon
chr4:78104949-78105119
Coord C2 exon
chr4:78105204-78105368
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTCAAATTACCAATTGGCAGCAA
3' ss Score
-0.07
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
GCCAAAGTGTCAGCCCCAGGCCCTTCCCACTCATGCGGTGTGGCCCTGGGCAGGTGCCCTGTGATGTATTGGGCTGTGTGGAGCAGGAGCAGCTATGTGACGGGAGGGAGGACTGTCTTGATGGCTCCGATGAGCAGCATTGTG
Seq A exon
CAAGTCCTGAGCCCTTCACTGTGCCTACTACTGCCCTCCCTGGGTTGCCAGCCTCAAGGGCCCTCTGTTCCCCAAGTCAGCTGAGCTGTGGCAGTGGGGAGTGCCTACCCCTTGAGCATCGATGTGACCTTCAGGTGAACTGCCAGGATGGCTCTGATGAGGATGACTGTG
Seq C2 exon
TCGACTGTGTGTTGGCACCTTGGTCTGGCTGGAGTGACTGCAGCCGCAGCTGTGGCCTGGGCCTCATCTTCCAGCACCGAGAGCTGCTGAGACCTCCCCTGCCTGGAGGCAGCTGTCTGTTGGACCAGCTCCGTAGCCAGCCCTGCTTTGTGCAAGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'51-54,'51-53,52-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=75.5)
A:
PF0005713=Ldl_recept_a=WD(100=63.8)
C2:
PF0009014=TSP_1=WD(100=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCCTGTGATGTATTGGG
R:
CACAAAGCAGGGCTGGCTAC
Band lengths:
244-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]