GgaEX6017992 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:329744-331134:+
Coord C1 exon
chr2:329744-329932
Coord A exon
chr2:330012-330182
Coord C2 exon
chr2:330970-331134
Length
171 bp
Sequences
Splice sites
3' ss Seq
CACAAGGGCCTTTCCCACAGGAG
3' ss Score
6.07
5' ss Seq
GTGGTGTGT
5' ss Score
3.6
Exon sequences
Seq C1 exon
GATGGCCCAGGGGTCCCGCTTGTCCCACCAGCCCCCACCACAGCCCTCGCTCCCCACCAGAGCCACCCCTGCCCCGGCTCCTGTGCCCCCCGGACCAGTTCCTCTGTGATGCCCTGGGCTGTGTGGATGCAGCCATGGTCTGTGATGGGCAGCAGGACTGCCTGGATGGCTCTGATGAGGCGCACTGCG
Seq A exon
GAGCCCTCCCCACCTCCGGCAGCTCCCCGTCACCCCTGGCCTGGCCCAGCGGTCCCTCACCCACCTGCTCCCCCAAGCAGTTCTCCTGCGGCACGGGTGAGTGCCTGGCCCTGGAGAAGCGCTGCGACCTGAGCCGTGACTGTGCTGATGGCTCCGATGAGAGCAGCTGTG
Seq C2 exon
CTGACTGCATCCTGTCCCCATGGGGTGGCTGGAGCCAGTGCAGCCACTCCTGCGGGCTGGGGGTGACGTCTCGCCAACGGGTCCTGCTGCGGGGTGCCCTGCCTGGGGGCACCTGCCACACCCCCCGCCTTGATACCCGCGCCTGCTTCCTGCGTGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'30-34,'30-33,31-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=56.2)
A:
PF0005713=Ldl_recept_a=PU(92.5=63.8)
C2:
PF0005713=Ldl_recept_a=PD(5.0=3.6),PF0009014=TSP_1=WD(100=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCTCTGTGATGCCCTG
R:
GAAGCAGGCGCGGGTATC
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]