BtaEX6029405 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113462130-113463388:+
Coord C1 exon
chr4:113462130-113462273
Coord A exon
chr4:113462945-113463124
Coord C2 exon
chr4:113463224-113463388
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTTGCCCTTCCCCACCCCAGCAT
3' ss Score
6.81
5' ss Seq
GTGGTAGGG
5' ss Score
4.2
Exon sequences
Seq C1 exon
GACGGAGCACCACGCCGGGGCCCTTCCCGCATGTGCAGTGCAGCCCAGGCCAGGTGCCCTGCGAGGTCCTGGGCTGCGTGGAGCTGGAGCAGCTGTGTGACGGGAGAGAGGACTGTCTGGACGGCTCTGATGAGAGGCCCTGCG
Seq A exon
CATGGGCAGCGGGCACCGTGCCCTTCACCGTGCCCACCACCACCCTGCCGGGGTTGCCGGCCTCCAGGGACCTCTGCTCCCCGAGCCAGCTGACCTGCGGCAGTGGGGAGTGTCTGCCTGCCGAGCGGCGCTGCGACCTGCAGCTGGACTGCCAGGACGGCTCGGACGAGAATGGCTGTG
Seq C2 exon
TGGACTGTGGCCTGGCGCCCTGGTCTGGCTGGAGCAGCTGCAGCCGTAGCTGTGGCCTGGGCCTCGCCTTCCAGCGCCGGGAGCTACTGCGGCCGCCCCTGCCCGGGGGCAGCTGCCCACCGGACCGGCTCCGCAGCCAGCCCTGCTTCGTGCAGGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'59-58,'59-57,60-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.066 C2=0.054
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=75.5)
A:
PF0005713=Ldl_recept_a=PU(92.5=60.7)
C2:
PF0005713=Ldl_recept_a=PD(5.0=3.6),PF0009014=TSP_1=WD(100=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTGCGAGGTCCTG
R:
ACGAAGCAGGGCTGGCTG
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]