MmuEX6004229 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48470878-48472813:+
Coord C1 exon
chr6:48470878-48471021
Coord A exon
chr6:48472394-48472564
Coord C2 exon
chr6:48472649-48472813
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTCAAATGACCAATTGGCAGCAA
3' ss Score
-1.55
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
GCCAAACTGTCAGCCCCAGGCCCTTCCCACCCATGCCGTGTGGCCCTGGGCAGGTGCCCTGTGATGTGTTGGGCTGTGTGGAGCAGGAACAGCTGTGTGATGGGAGGGAAGACTGTCTTGATGGATCCGATGAGCAGCACTGTG
Seq A exon
CAAGTGCTGAGCCCTTCACTGTGCCTACTACTGCCCTCCCTGGGTTACCAGCCTCAAAGGCCCTCTGCTCCCCAAGTCAGCTGAGATGTGGCAGTGGGGAGTGTCTACCTTTTGAGCATCGCTGTGACCTTCAGGTGAACTGCCAGGATGGCTCTGATGAAGACAACTGTG
Seq C2 exon
TAGACTGTGTGTTGGCACCTTGGTCTGGCTGGAGTGACTGCAGCCGCAGCTGTGGCCTGGGCCTCATCTTCCAGCACCGAGAGCTGCTAAGACTTCCCCTGCCTGGAGGCAGCTGTCTGTTGGACCAGTTCCGTAGCCAGTCCTGCTTTGTGCAAGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'54-54,'54-53,56-54=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=75.5)
A:
PF0005713=Ldl_recept_a=WD(100=63.8)
C2:
PF0009014=TSP_1=WD(100=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGCCCTGTGATGTGTTG
R:
CACAAAGCAGGACTGGCTACG
Band lengths:
246-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types