HsaEX7104916 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149800287-149802204:+
Coord C1 exon
chr7:149800287-149800430
Coord A exon
chr7:149801741-149801955
Coord C2 exon
chr7:149802040-149802204
Length
215 bp
Sequences
Splice sites
3' ss Seq
TGAGTGTATCATTCAGCCAGGAA
3' ss Score
0.25
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCCAGAGCGTCGCCCCAGGACCCTTCCCACCTGTGCAGTGTGGCCCCGGCCAGACGCCCTGTGAGGTGCTGGGCTGCGTGGAACAGGCGCAGGTGTGTGATGGCAGGGAGGATTGCCTCGACGGCTCCGACGAGAGGCACTGCG
Seq A exon
GAATCTACTTATGTGGCTCCCTTCTCTCCCTGCCTTGTGGGCAGCGAGCACTGTGCCCTTCATGATGCCTACCATGGCCCTGCCTGGGCTTCCAGCCTCAAGGGCCCTCTGTTCCCCGAGCCAGCTGAGCTGTGGCAGCGGGGAGTGTCTGTCTGCTGAGCGGCGCTGTGACCTGCGGCCTGACTGCCAGGATGGCTCGGACGAGGATGGCTGTG
Seq C2 exon
TGGACTGCGTGCTGGCCCCCTGGTCTGTCTGGAGCAGCTGCAGCCGCAGCTGTGGCCTGGGCCTCACCTTCCAGCGCCAGGAGCTGCTGCGGCCTCCTCTGCCAGGGGGCAGCTGCCCGCGTGACCGGTTCCGAAGCCAGTCCTGCTTTGTGCAGGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'64-74,'64-71,65-74=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGACCCTTCCCAC
R:
CACAAAGCAGGACTGGCTTCG
Band lengths:
284-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains