GgaEX7001542 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:423295-424689:+
Coord C1 exon
chr2:423295-423423
Coord A exon
chr2:423503-423673
Coord C2 exon
chr2:424525-424689
Length
171 bp
Sequences
Splice sites
3' ss Seq
CACAAGGGCCTTTCCCACAGGAG
3' ss Score
6.07
5' ss Seq
GTGGTGTGT
5' ss Score
3.6
Exon sequences
Seq C1 exon
AGCCACCCCTGCCCCGGCTCCTGTGCCCCCCGGACCAGTTCCTCTGTGATGCCCTGGGCTGTGTGGATGCAGCCATGGTCTGTGATGGGCAGCAGGACTGCCTGGATGGCTCTGATGAGGCGCACTGCG
Seq A exon
GAGCCCTCCCCACCTCCGGCAGCTCCCCGTCACCCCTGGCCTGGCCCAGCGGTCCCTCACCCACCTGCTCCCCCAAGCAGTTCTCCTGCGGCACGGGTGAGTGCCTGGCCCTGGAGAAGCGCTGCGACCTGAGCCGTGACTGTGCTGATGGCTCCGATGAGAGCAGCTGTG
Seq C2 exon
CTGACTGCATCCTGTCCCCATGGGGTGGCTGGAGCCAGTGCAGCCACTCCTGCGGGCTGGGGGTGACGTCTCGCCAACGGGTCCTGCTGCGGGGTGCCCTGCCTGGGGGCACCTGCCACACCCCCCGCCTTGATACCCGCGCCTGCTTCCTGCGTGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'49-49,'49-48,50-49=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.224 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=81.8)
A:
PF0005713=Ldl_recept_a=PU(92.5=63.8)
C2:
PF0005713=Ldl_recept_a=PD(5.0=3.6),PF0009014=TSP_1=WD(100=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCTCTGTGATGCCCTG
R:
GAAGCAGGCGCGGGTATC
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]