MmuEX0045061 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48420426-48422563:+
Coord C1 exon
chr6:48420426-48420590
Coord A exon
chr6:48420877-48421020
Coord C2 exon
chr6:48422393-48422563
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGATGGTGTCCTGTCTGCAGGCC
3' ss Score
9.17
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
CAGGTCTCATCCCTGCTTCTGAGGGTACTCTGCCTGTTTCAGGGCAGCCCATGCAGACACTGTCTGCTACCTCCACCTTCCCTCCTGGTGCCAAGAGCCTACACCCAGGAATGGCAGCTGTGACGGTGCATCCTCCACACTCAGTCACACCAGGAGCTCCTGTTG
Seq A exon
GCCAAACTGTCAGCCCCAGGCCCTTCCCACCCATGCCGTGTGGCCCTGGGCAGGTGCCCTGTGATGTGTTGGGCTGTGTGGAGCAGGAACAGCTGTGTGATGGGAGGGAAGACTGTCTTGATGGATCCGATGAGCAGCACTGTG
Seq C2 exon
CAAGTGCTGAGCCCTTCACTGTGCCTACTACTGCCCTCCCTGGGTTACCAGCCTCAAAGGCCCTCTGCTCCCCAAGTCAGCTGAGATGTGGCAGTGGGGAGTGTCTACCTTTTGAGCATCGCTGTGACCTTCAGGTGAACTGCCAGGATGGCTCTGATGAAGACAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.286 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
PF0005713=Ldl_recept_a=WD(100=75.5)
C2:
PF0005713=Ldl_recept_a=WD(100=63.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATCCCTGCTTCTGAGGG
R:
ACATCTCAGCTGACTTGGGGA
Band lengths:
250-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: