RnoEX6013490 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78103019-78105119:+
Coord C1 exon
chr4:78103019-78103179
Coord A exon
chr4:78103447-78103590
Coord C2 exon
chr4:78104949-78105119
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGGTGATGTCCCGTCTGCAGGCC
3' ss Score
8.25
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GTCTCCCAGTGCCTCTGAGGGCCTTCTGCCTGTTTCAGGGCAGTCAATGCAGACACTGACCACCACCTCCACCTTCCCTCCTGGGCTCAAGAGCCTACACCCAGGAATGGCAGCTGTGACGGTGCATTCCCCACACTCAGTCATGCCAGGAACTCCTGTTG
Seq A exon
GCCAAAGTGTCAGCCCCAGGCCCTTCCCACTCATGCGGTGTGGCCCTGGGCAGGTGCCCTGTGATGTATTGGGCTGTGTGGAGCAGGAGCAGCTATGTGACGGGAGGGAGGACTGTCTTGATGGCTCCGATGAGCAGCATTGTG
Seq C2 exon
CAAGTCCTGAGCCCTTCACTGTGCCTACTACTGCCCTCCCTGGGTTGCCAGCCTCAAGGGCCCTCTGTTCCCCAAGTCAGCTGAGCTGTGGCAGTGGGGAGTGCCTACCCCTTGAGCATCGATGTGACCTTCAGGTGAACTGCCAGGATGGCTCTGATGAGGATGACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'50-53,'50-51,51-53=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.204 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
PF0005713=Ldl_recept_a=WD(100=75.5)
C2:
PF0005713=Ldl_recept_a=WD(100=63.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCAGACACTGACCACCAC
R:
GTCACATCGATGCTCAAGGGG
Band lengths:
244-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]