BtaEX6029406 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113461668-113463124:+
Coord C1 exon
chr4:113461668-113461832
Coord A exon
chr4:113462130-113462273
Coord C2 exon
chr4:113462945-113463124
Length
144 bp
Sequences
Splice sites
3' ss Seq
GGCTGCGGTGGCGCCCACAGGAC
3' ss Score
7.17
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCAAGGGGCCAGCGAGTCTTGGGTCCGAGCCTCACCCAAGTCCTGGGGGATCTGTGCAGACTGTGACCCCCACCTCCCAACCGGAGGCACAGGCCCTGAGACCGGAAATGGCAGCTGTGACGGTGCTCCCCCCACACCCCATGGTGACGCCCGAGGTTCCTGCTG
Seq A exon
GACGGAGCACCACGCCGGGGCCCTTCCCGCATGTGCAGTGCAGCCCAGGCCAGGTGCCCTGCGAGGTCCTGGGCTGCGTGGAGCTGGAGCAGCTGTGTGACGGGAGAGAGGACTGTCTGGACGGCTCTGATGAGAGGCCCTGCG
Seq C2 exon
CATGGGCAGCGGGCACCGTGCCCTTCACCGTGCCCACCACCACCCTGCCGGGGTTGCCGGCCTCCAGGGACCTCTGCTCCCCGAGCCAGCTGACCTGCGGCAGTGGGGAGTGTCTGCCTGCCGAGCGGCGCTGCGACCTGCAGCTGGACTGCCAGGACGGCTCGGACGAGAATGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'57-57,'57-56,59-57=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.265 C2=0.066
Domain overlap (PFAM):
C1:
NO
A:
PF0005713=Ldl_recept_a=WD(100=75.5)
C2:
PF0005713=Ldl_recept_a=PU(92.5=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGACCGGAAATGGCAG
R:
CACAGCCATTCTCGTCCGAG
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]