HsaEX6011198 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149496922-149499043:+
Coord C1 exon
chr7:149496922-149497092
Coord A exon
chr7:149497375-149497518
Coord C2 exon
chr7:149498825-149499043
Length
144 bp
Sequences
Splice sites
3' ss Seq
GGCTGTGGTGGTGCCCACAGGCC
3' ss Score
7.87
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGACAAGGCCCGTGAGTCCTGGCCCAGCCTCCGGGGTGCCTCACCATGGGGAATCTGTGCAGATGGTGACCACCACCCCCATACCCCAGATGGAGGCCAGGACCCTGCCACCAGGTATGGCAGCTGTGACGGTGGTGCCCCCACACCCTGTGACTCCAGCGACCCCTGCTG
Seq A exon
GCCAGAGCGTCGCCCCAGGACCCTTCCCACCTGTGCAGTGTGGCCCCGGCCAGACGCCCTGTGAGGTGCTGGGCTGCGTGGAACAGGCGCAGGTGTGTGATGGCAGGGAGGATTGCCTCGACGGCTCCGACGAGAGGCACTGCG
Seq C2 exon
CCAGGAATCTACTTATGTGGCTCCCTTCTCTCCCTGCCTTGTGGGCAGCGAGCACTGTGCCCTTCATGATGCCTACCATGGCCCTGCCTGGGCTTCCAGCCTCAAGGGCCCTCTGTTCCCCGAGCCAGCTGAGCTGTGGCAGCGGGGAGTGTCTGTCTGCTGAGCGGCGCTGTGACCTGCGGCCTGACTGCCAGGATGGCTCGGACGAGGATGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'57-56,'57-55,58-56=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.418 C2=0.004
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACCCCAGATGGAGGCCAG
R:
CTCAGCAGACAGACACTCCCC
Band lengths:
256-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)