RnoEX6013522 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78084098-78085008:+
Coord C1 exon
chr4:78084098-78084269
Coord A exon
chr4:78084391-78084631
Coord C2 exon
chr4:78084864-78085008
Length
241 bp
Sequences
Splice sites
3' ss Seq
CCAATTTTTTGTTCCCACAGAAC
3' ss Score
10.19
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTTCCCCCAGATGAGTACCATGAGACCTGCCTCTTTGCTTACTGTGTTGGAGCCACAGCAGGCAGTGGCCCGGAGGAGCAAGTGAAGGCTGTGTGTGCCACCTTTGCCAACTATGCCCAGGCCTGTGCCAGGCAGCACATCTATGTGCACTGGAGGAAGCCTGGCTTCTGTG
Seq A exon
AACGTTTGTGTCCAGGGGGGCAGCTCTACTCTGACTGCATCTCATCCTGTCCACCCAGCTGTTCTGCAGTAGCCCAGGGCGAGGAGGGGTCTTGTGGGAAAGAGTGTGTGAGTGGCTGTGAGTGCCCGACCGGCCTCTTCTGGGATGGTGCTCTCTGTGTGCCTGCTGCCCATTGCCCTTGCTACTACCGGCGCCAGCGCTACGCCCCTGGTGACACTGTGAAACAGCAGTGCAACCCTTG
Seq C2 exon
TGTGTGCCAGGATGGCCGCTGGCACTGTGCCCAGGCCCCGTGCCCTGCTGAGTGTGCAGTGGGTGGCGACGGGCATTACTGCACCTTTGATGGGCGGAGCTTCTCCTTCAGGGGCAATCCCGGCTGCCAGTACAGCCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'9-11,'9-9,10-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(71.2=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=69.1),PF0009313=VWC=PU(38.5=24.7),PF053758=Pacifastin_I=PU(37.5=14.8)
C2:
PF0009313=VWC=PD(59.6=63.3),PF053758=Pacifastin_I=PD(59.4=38.8),PF0009420=VWD=PU(19.9=61.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCCCAGATGAGTACCATG
R:
GGATTGCCCCTGAAGGAGAAG
Band lengths:
292-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]