RnoEX6013528 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78081448-78082296:+
Coord C1 exon
chr4:78081448-78081627
Coord A exon
chr4:78081835-78082079
Coord C2 exon
chr4:78082197-78082296
Length
245 bp
Sequences
Splice sites
3' ss Seq
ACACATGATGTCTTGCTCAGGCA
3' ss Score
5.34
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCCTTGCTGAAGCCAGCCCTAAAGGTCATTGCTTTGTCACATGGCATTGCCAACCTCTAGCAGGTTCAGCTAATTCTTCAGCAGGAAGCCTGGAGGAATGCTGTGCCCAGCCCTGGGGACATAGCTGGTGGAACAGCAGCTCCCAAATGTGTCTCAGCTGTTCTGGTCAGCACCGCCCAG
Seq A exon
GCAATGCTTCCTCTGAAGGCCTCCTGCAGCCTCTGGCAGGGGCTGTAGGCCAGCTCTGGAGCCAGCGCCAGCGTCCCTCTGCCACCTGTGCCACCTGGTCTGGCTTCCACTACCAAACCTTTGATGGACAGCACTACCACTTCCTGGGCCAGTGTACCTACTTACTAGCTGGTGCTATGGATTCCACTTGGGCTGTCCACCTCAGGCCTAGTGTCCACTGTCCCCAGCCTAGGCAGTGCTGGCTG
Seq C2 exon
GTTCAAGTGATAATGGGGCCTGAGGAGGTTTTGATCCAAGATGGAGAGGTCTCCGTGAAGGGCCAGCCAGTGCCTGTTGGGGAGTCTCAGCTGCTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(35.1=63.4)
C2:
PF0009420=VWD=FE(22.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGCCAGCCCTAAAGGTC
R:
ATGGAGCAGCTGAGACTCCC
Band lengths:
273-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]