RnoEX6015158 @ rn6
Exon Skipping
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158204493-158209368:+
Coord C1 exon
chr4:158204493-158204600
Coord A exon
chr4:158208453-158208633
Coord C2 exon
chr4:158209328-158209368
Length
181 bp
Sequences
Splice sites
3' ss Seq
ACGGTCTTTGTACTCTGTAGGTT
3' ss Score
8.92
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGTTTTTCTTATGTTCTCCACGAAGGGGAGTGCTGTGGAAAGTGCCTGCCGTCTGCTTGCAAGGTGGCTGGCTCACCGAGGGGTGATTCCCTCTCTTCCTGGAAGAGC
Seq A exon
GTTGGGTCTCAGTGGGCTGTTCCTGAGAACCCCTGCCTCATCAATGAGTGTGTCCGAGTGGAGGACGCAGTGTTTGTGCAGCAGAGGAACATCTCCTGCCCACAGCTGGCTGTCCCTACCTGTCCCACGGGCTTCCAGCTGAACTGTGAGACCTCAGCATGCTGTCCCAGCTGTCACTGTG
Seq C2 exon
AGCCTGTGGAGGCCTGCCTGCTCAATGGCACCATCATTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689-'58-51,'58-50,59-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(21.9=38.9)
A:
NO
C2:
PF0009313=VWC=PU(12.7=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTTCTTATGTTCTCCACGAAGG
R:
AATGATGGTGCCATTGAGCAGG
Band lengths:
146-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]