BtaEX6024532 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012265 | VWF
Description
Bos taurus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001205308]
Coordinates
chr5:104712951-104716212:+
Coord C1 exon
chr5:104712951-104713061
Coord A exon
chr5:104715072-104715252
Coord C2 exon
chr5:104716172-104716212
Length
181 bp
Sequences
Splice sites
3' ss Seq
CTTGGGTGCTCTGCCCACAGGTT
3' ss Score
10.16
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
GGCTTCACCTACGTCCTCCGCGAGGGAGAGTGCTGTGGAAGGTGCCTGCCGTCGGCCTGCGAGGTGGTGACCGGCTCCCCGCGGGGGGACTCCCAGACCCAGTGGAAGAGT
Seq A exon
GTTGGCTCTCACTGGGCCTCCCCCGAGAACCCCTGCCTCATCCACGAGTGCGTCCGAGTCGAGGAGGAGGTCTTCGTGCAGCAGAGGAATGTCTCCTGCCCGCAGCTGAATGTCCCCGTCTGCCCGTTGGGCTTCCAGCTGCGCTGTCAGACCTTGGGCTGTTGCCCCACCTGTCGCTGCG
Seq C2 exon
AGCCCGTGCAGGCTTGCGTCCTCAACGGCACCATCATCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012265-'52-50,'52-49,53-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(21.9=37.8)
A:
NO
C2:
PF0009313=VWC=PU(12.7=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCACCTACGTCCTCCG
R:
GATGATGGTGCCGTTGAGGAC
Band lengths:
149-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]