GgaEX6003197 @ galGal4
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
von Willebrand factor [Source:HGNC Symbol;Acc:HGNC:12726]
Coordinates
chr1:74355098-74358325:-
Coord C1 exon
chr1:74358215-74358325
Coord A exon
chr1:74356078-74356261
Coord C2 exon
chr1:74355098-74355138
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTTTTACAATTTCCCGTCAGGTT
3' ss Score
8.76
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GGATATAAGTATATTGTTCAAGACGGGGAGTGCTGTGGGCGCTGCCAGAAAACTGCCTGTGAGGAGCAACCATTCTGGTCTCGGGGTGATGCAGATCCTCATTTATATGAG
Seq A exon
GTTGGCACGGAGTGGCGATCTCCCTTCAATAGGTGCATAATTAATGAGTGTGTCCGAGTGAATGATGAGGTTTTTGTGCAGCAAAAGAATCTGTCCTGCTCTCAGATGGATGTACCTGACTGTCCAGATGGAACTGAATTACGCTGTGACCAAGTAATAGACTGCTGTCCTTCGTGTAGATGTG
Seq C2 exon
TACCTGTGAATGGTTGTCCTTTGAATGGCACTCTTATTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272-'75-95,'75-93,78-95=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(21.9=37.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATATTGTTCAAGACGGGGAGTG
R:
CCCAATAAGAGTGCCATTCAAAGG
Band lengths:
146-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]