DreEX6064137 @ danRer10
Exon Skipping
Gene
ENSDARG00000077231 | vwf
Description
von Willebrand factor [Source:ZFIN;Acc:ZDB-GENE-070103-1]
Coordinates
chr18:7257622-7260476:+
Coord C1 exon
chr18:7257622-7257705
Coord A exon
chr18:7257790-7257973
Coord C2 exon
chr18:7260436-7260476
Length
184 bp
Sequences
Splice sites
3' ss Seq
CCTCCACTTTCTGTTTGAAGGTC
3' ss Score
9.75
5' ss Seq
GTGGTACAG
5' ss Score
1.34
Exon sequences
Seq C1 exon
GGAAGCACATACTCTCATTCAGGAGGCGAGTGTTGCGGTCACTGCCGTAAATCCAGCTGTGAGGAAGGAGGACTGTTGAGGCAG
Seq A exon
GTCGGAGAGCAGTGGGTGTCTGCGAACGACAGATGTGTGTGGAGCGAATGTGTGCAAGTGAATGAGGAAGTGTTCATCCAGCATACAAACGTGTCCTGCCATCACATGGACACGCCGGCCTGTCCGCTGGGCACTGAGCTCCAGTGCAATACAGTGGACGACTGCTGCCCATCCTGCCACTGTG
Seq C2 exon
TCCCAATGAATGCCTGCGTGCTGAATCAAACTGTTATTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077231-'49-50,'49-49,51-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(21.9=46.7)
A:
NO
C2:
PF0009313=VWC=PU(13.3=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACATACTCTCATTCAGGAGG
R:
CGCAATAACAGTTTGATTCAGCAC
Band lengths:
122-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]