RnoEX6015261 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161808692-161810196:-
Coord C1 exon
chr4:161809946-161810196
Coord A exon
chr4:161808995-161809213
Coord C2 exon
chr4:161808692-161808822
Length
219 bp
Sequences
Splice sites
3' ss Seq
TGTATCTTTCTTTTTCTCAGGAT
3' ss Score
10.3
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGGAATCAGTGCACTGGCAACGTCCTAAGAATGTCGAGGAAAATGTCCGGGAAATGAGGTCCTTCTCTTATAAACCGCGGGCCCCTTCTGCTGAAGTGGAGATGACAGCTTACGTGCTTCTCGCCTACCTCACCTCTGCATCTTCCCGGCCTACGCGAGACCTTTCTTCATCGGACCTGACTACAGCATCCAAGATTGTGAAGTGGATCAGCAAACAACAAAACTCCCATGGGGGGTTCTCCTCCACTCAG
Seq A exon
GATACAGTGGTGGCTCTTCAAGCCCTCTCCAAATATGGAGCAGCCACTTTTACGAAAAGTAATAAAGAAGTGTCGGTCACCATCGAGTCTTCAGGGACCGTCTCTGGGACTCTCCATGTTAACAATGGCAATCGCCTGCTGCTGCAGGAAGTCAGGCTGGCAGATCTGCCCGGAAATTACATCACCAAAGTGTCAGGGTCAGGATGTGTGTACCTCCAG
Seq C2 exon
ACATCTCTAAAGTACAACATCCTTCCGGAGGCAGAAGGAGAAGCGCCCTTCACTCTGAAGGTCAACACTCTCCCCTTAAACTTTGATAAGGCAGAACATCACAGAAAGTTCCAGATCCACATCAACGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'33-43,'33-42,34-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(31.2=100)
A:
PF076789=A2M_comp=PD(4.9=17.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGCAACGTCCTAAGAA
R:
TTCAGAGTGAAGGGCGCTTCT
Band lengths:
300-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]