BtaEX6024072 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101260530-101262677:+
Coord C1 exon
chr5:101260530-101260753
Coord A exon
chr5:101262156-101262374
Coord C2 exon
chr5:101262547-101262677
Length
219 bp
Sequences
Splice sites
3' ss Seq
CTGCACCCATCTTTTTTCAGGAT
3' ss Score
10.72
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGGACTCAATCCACTGGCAACGTCCTAGAAAGCCTCAAGAAGTTAATGAACTCTACAGTCCACACCGGGCTCCTTCTGTTGATGTGGAGATGACATCTTACTGCCTCCTTGCCCATCTTACTGCCCAGCCTGCCCCATCTTCAGAAGATCTGTCTGTGGCTACACAGATTGTAAAATGGCTCACCAAGCAACAGAACCCCAATGGCGGCTTCTCCTCCACTCAG
Seq A exon
GATACAGTGGTGGCTCTTCAGGCACTCTCCAAATATGGAGCAGCAACTTTTATTAAAGGGGAGAAAGCAGCTACTGTCACCGTCAAGTCTGCAGGGACCTTCTCTGAAGAATTCCAAGTAGATGAAGCCAAACGTCTACTGCTGCAGGAGGTGGCTTTGCCAGAGATCCCGGGGAAGTACAGCACAGCCGTGACAGGGTCGGGATGTGTGTACATCCAG
Seq C2 exon
ACATCCTTGAGATATAATATCCTACCCAAGAAAGAAGGAAAAGCTCCCTTTACTCTGAAAGTTGAAACTCTCCCCAAAAACTGTGATGGAGTCAGCACTCACAGGAAAGTCCAGATTCACGTCAATATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461-'46-56,'46-55,47-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.307 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.9=100)
A:
PF076789=A2M_comp=PD(5.1=17.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACGTCCTAGAAAGCCTC
R:
AGTGCTGACTCCATCACAGTT
Band lengths:
308-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]