HsaEX6065113 @ hg38
Exon Skipping
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9152824-9154839:-
Coord C1 exon
chr12:9154616-9154839
Coord A exon
chr12:9153125-9153343
Coord C2 exon
chr12:9152824-9152951
Length
219 bp
Sequences
Splice sites
3' ss Seq
TGTCCACTCGTCTCTTCCAGGAC
3' ss Score
12.09
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACAACCTCGTCCATTGGGAGCGCCCTCAGAGACCCAAGGCACCAGTGGGGCATCTTTACCAAACCCAGGCTCCCTCTGCTGAGGTGGAGATGACATCCTATGTGCTCCTCGCTTATCTCACGGCCCAGCCAGCCCCCACCTCAGGGGACCTGACCTCTGCAACTAACATTGTGAAGTGGATCATGAAGCAGCAGAACGCCCAAGGTGGTTTCTCCTCCACCCAG
Seq A exon
GACACAGTGGTGGCTCTCCATGCCCTGTCCAGGTATGGAGCAGCCACTTTCACCAGAACTGAGAAAACTGCACAGGTCACCGTTCAGGATTCACAGACCTTTTCTACAAATTTCCAAGTAGACAACAACAACCTCCTATTACTGCAGCAGATCTCATTGCCAGAGCTCCCTGGAGAATATGTCATAACAGTAACTGGGGAAAGATGTGTGTATCTTCAG
Seq C2 exon
ACATCCATGAAATACAATATTCTTCCAGAGAAAGAGGACTCCCCATTTGCTTTAAAAGTGCAGACTGTGCCCCAAACTTGCGATGGACACAAAGCCCACACCAGCTTTCAGATCTCACTGACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-'43-43,'43-42,44-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.8=100)
A:
PF076789=A2M_comp=PD(5.1=17.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGTGGGGCATCTTTACC
R:
GATCTGAAAGCTGGTGTGGGC
Band lengths:
299-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains