MmuEX1017836 @ mm10
Exon Skipping
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121882582-121885894:+
Coord C1 exon
chr6:121882582-121882805
Coord A exon
chr6:121884184-121884402
Coord C2 exon
chr6:121885804-121885894
Length
219 bp
Sequences
Splice sites
3' ss Seq
TATTTATTCATTCCCATCAGGAC
3' ss Score
8.57
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACAACTCTATCCACTGGAAAAGACCTCAGAAATCCAGGAAATCTGAACACCATTTGTACAAACCCCAGGCTTCCTCTGCTGAAGTAGAGATGAATGCATATGTGGTCCTGGCTCGCCTCACTGCCCAGCCAGCCCCATCCCCTGAGGATCTGACTTTGTCAATGAGCACCATCATGTGGCTCACAAAGCAACAGAATTCCAATGGTGGCTTCTCCTCCACACAG
Seq A exon
GACACTGTGGTGGCCCTTGATGCTCTGTCCAAATATGGAGCAGTGACTTTTTCGAGAAGTCAGAAAACGACTTTGGTGACTATCCAATCTACAGGGTCATTTTCCCAAAAGTTCCAAGTGGAGAACAGTAATCGCCTGTTACTACAGCAGGTCGCATTACCAGACATTCCTGGGGACTATACCATCAGTGTGTCAGGGGAAGGATGTGTGTATGCTCAG
Seq C2 exon
TTACACAGGCAGCCGGCCAGCCTCCAACATGGTGATTGCTGATGTGAAGATGCTATCTGGTTTCATCCCATTGAAACCAACAGTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908_MULTIEX1-9/17=8-11
Average complexity
C3
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.8=100)
A:
PF076789=A2M_comp=PD(5.1=17.8)
C2:
PF076779=A2M_recep=PU(25.0=71.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGGAAAAGACCTCAGA
R:
TCACTGTTGGTTTCAATGGGA
Band lengths:
301-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types