GgaEX6003330 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75822682-75823804:-
Coord C1 exon
chr1:75823584-75823804
Coord A exon
chr1:75822939-75823154
Coord C2 exon
chr1:75822682-75822806
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATAATATTTTTTCTTTTCAGGAC
3' ss Score
11.71
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCGGTTCAGTTTACTGGCAGAGAGAAAATAAGCCACCAGCAGAACACTTCCCTGCTTTTTATTCCCGTGCCCCTTCTGCTGAGATTGAAATGACCAGCTATGTACTTCTGGCTTTGCTCAACAAAGCCGAACTCACACCGGATGACTTATCATATATTTCTCGCATTGTGTACTGGCTCGTGAAACAACAGAACCCATATGGTGGTTTCTCCTCCAGCCAG
Seq A exon
GACACTGTTGTTGCCATCCAAGCTTTAGCCCAGTATGGATACCTCACCTTCTCTAAGGAAAGTCATAATACAGTTAAGGTCAACTTCATGGAAATCCCCAAGAAGGCTTTCCAGGTGAATGATGAGAACCGCTTCTTACTGCAGCAAACTTCCCTACCCACTGTTTTGGGGAATTACAGTGTGGAAGTGTATGGCACTGGCTGTGTCTATATGCAG
Seq C2 exon
ACAACCCTGAAATACAACATCCACTTACCGAAGAAAGCTGCTGGATTTTTTCTCTCTGTAGAGCCAGCCAATGTGTCCTGTACCAGCAACTTCCCACTGAAGTTTGACCTTGTCTTCTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'34-32,'34-31,37-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(29.3=100)
A:
PF076789=A2M_comp=PD(5.2=18.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTTCAGTTTACTGGCAGA
R:
GGACACATTGGCTGGCTCTAC
Band lengths:
299-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]