GgaEX6003330 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79464378-79465499:-
Coord C1 exon
chr1:79465279-79465499
Coord A exon
chr1:79464635-79464850
Coord C2 exon
chr1:79464378-79464502
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATAATATTTTTTCTTTTCAGGAC
3' ss Score
11.71
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCGGTTCAGTTTACTGGCAGAGAGAAAATAAGCCACCAGCAGAACACTTCCCTGCTTTTTATTCCCGTGCCCCTTCTGCTGAGATTGAAATGACCAGCTATGTACTTCTGGCTTTGCTCAACAAAGCCGAACTCACACCGGATGACTTATCATATATTTCTCGCATTGTGTACTGGCTCGTGAAACAACAGAACCCATATGGTGGTTTCTCCTCCAGCCAG
Seq A exon
GACACTGTTGTTGCCATCCAAGCTTTAGCCCAGTATGGATACCTCACCTTCTCTAAGGAAAGTCATAATACAGTTAAGGTCAACTTCATGGAAATCCCCAAGAAGGCTTTCCAGGTGAATGATGAGAACCGCTTCTTACTGCAGCAAACTTCCCTACCCACTGTTTTGGGGAATTACAGTGTGGAAGTGTATGGCACTGGCTGTGTCTATATGCAG
Seq C2 exon
ACAACCCTGAAATACAACATCCACTTACCGAAGAAAGCTGCTGGATTTTTTCTCTCTGTAGAGCCAGCCAATGTGTCCTGTACCAGCAACTTCCCACTGAAGTTTGACCTTGTCTTCTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(29.1=100)
A:
PF076789=A2M_comp=PD(5.2=18.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTTCAGTTTACTGGCAGA
R:
GGACACATTGGCTGGCTCTAC
Band lengths:
299-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]