GgaEX6003304 @ galGal3
Exon Skipping
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79421686-79423984:-
Coord C1 exon
chr1:79423767-79423984
Coord A exon
chr1:79422203-79422418
Coord C2 exon
chr1:79421686-79421810
Length
216 bp
Sequences
Splice sites
3' ss Seq
CTTTTATTATTTTCTTTCAGGAC
3' ss Score
12.11
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
ACGGTTCAAAGTACTGGGAGCAGAACCAGAGATCTGCACCTGAAAAATCCCACCTCTTAGACCATGTTCAATCAACTGATGTTGAGATCACCAGCTACGTGCTGTTGGCATTGCTCTACAAACCAAATCGCAGTCAAGAGGATCTCACAAAGGCCTCAGCAATTGTGCAGTGGATTATCAGGCAACAGAATTCCTATGGAGGTTTCGCTTCCATGCAG
Seq A exon
GACACGGTGGTTGCTCTTCAAGCCCTTGCTGCTTATGGTGCGGCCACCTACAATTCAGTTACACAAAATGTCATCAAGATCAATTCCAAGAACACTTTTGAGAAAGTATTTACTGTTAATAATGAGAACAGGCTCCTACTGCAACAGACTCCCCTTCCTCAAGTCCCTGGGAAATACAGCTTAACAGTGAATGGCACTGGATGTGTACTTATACAA
Seq C2 exon
ACAGCACTGAGATACAACATTCACCTTCCAGAGGGAGCCTTTGGATTTTCCCTCTCAGTACAGACATCAAATGCTTCCTGCCCACGGGATCAACCAGGAAAATTTGATATTGTACTCATAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'35-39,'35-38,36-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(29.0=100)
A:
PF076789=A2M_comp=PD(5.2=18.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACCAGAGATCTGCACC
R:
TTTTCCTGGTTGATCCCGTGG
Band lengths:
301-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]