DreEX6014987 @ danRer10
Exon Skipping
Gene
ENSDARG00000078183 | A2ML1 (10 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:3681741-3682701:+
Coord C1 exon
chr3:3681741-3681925
Coord A exon
chr3:3682287-3682508
Coord C2 exon
chr3:3682580-3682701
Length
222 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTCTCGTTTAGGAC
3' ss Score
12.21
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTACTACTCTCCACTGGTCTCAGACGACATCTGGGGATACTCTGGCAGTGGAGATCAGTGCATATGTGCTGCTAGCGGTTCTAACTGTACAGCCTGTGACCACTGCTAATCTGGGCTATGCTAACCGCATTGTCAACTGGCTCGTGGCCCAGCAGAATCCCTATGGTGGTTTCTCCTCCACTCAG
Seq A exon
GACACCGTGGTGGCACTTCAGGCCTTGTCTATGTATGCTGCACAAGTCTTCAGCCCTGGAGGCTCCAGCACCGTTACAGTTCAGTCCTCAGTGCCAGCAGGTGATGTGTTCAACTTTGACGTGACTCCCAACAACCGCCTGCTGTACCAGGAGAGTCCACTGAATAACTTTCCAGGCACATACAGTGTTGTAGCAGCTGGAGCTGCCTGTGCTTCTGTACAG
Seq C2 exon
GTTTTATGTTTCTACAACATCCCGACTCCTGTTAGAGTTTCTAAAACACTGAGTGTTGTTGCGAAGGTGTCTGGAAACTGCCAGGCTACACCAGTCAATCTGATGTTGACCTTTACGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078183-'34-41,'34-40,35-41=AN
Average complexity
A_S
Mappability confidence:
62%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(26.1=100)
A:
PF076789=A2M_comp=PD(5.6=17.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCCACTGGTCTCAGACG
R:
GGCCGTAAAGGTCAACATCAGA
Band lengths:
300-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]