MmuEX6007288 @ mm9
Exon Skipping
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128437421-128439165:-
Coord C1 exon
chr6:128438924-128439165
Coord A exon
chr6:128437899-128438117
Coord C2 exon
chr6:128437421-128437551
Length
219 bp
Sequences
Splice sites
3' ss Seq
TGCATCTTTCTTTTTCTCAGGAT
3' ss Score
9.92
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGGATTCGCTGCACTGGCAACGCCCTGGGGATGTTCAGAAAGTGAAGGCCTTATCTTTCTATCAACCTCGGGCCCCTTCTGCCGAAGTGGAGATGACAGCTTACGTGCTTCTCGCCTATCTAACCTCTGAGTCTTCCCGGCCCACACGGGACCTGTCTTCATCAGACCTGTCCACAGCATCCAAGATTGTGAAGTGGATCAGCAAGCAACAAAACTCCCACGGGGGCTTCTCCTCCACTCAG
Seq A exon
GATACAGTGGTGGCTCTCCAAGCCCTCTCCAAATATGGAGCTGCCACTTTTACGAGAAGTCAGAAAGAAGTGTTGGTCACCATCGAGTCTTCAGGGACCTTCTCTAAGACTTTCCATGTTAACAGTGGCAATCGCCTGCTGCTGCAGGAAGTCAGGCTGCCAGATCTGCCCGGAAATTACGTCACCAAAGGGTCAGGATCAGGATGTGTGTACCTTCAG
Seq C2 exon
ACATCTCTAAAGTACAACATCCTCCCAGTGGCAGATGGAAAAGCACCCTTCGCTCTGCAAGTCAACACTCTCCCCCTAAACTTTGACAAGGCAGGAGATCACAGAACATTCCAGATTCGCATCAACGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-'30-29,'30-28,31-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(30.4=100)
A:
PF076789=A2M_comp=PD(4.9=17.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGGGATGTTCAGAAAG
R:
GGGGAGAGTGTTGACTTGCAG
Band lengths:
296-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: